Genetic constraints on temporal variation of airborne reflectance spectra and their uncertainties over a temperate forest

Remote sensing enhances large-scale biodiversity monitoring by overcoming temporal and spatial limitations of ground-based measurements and allows assessment of multiple plant traits simultaneously. The total set of traits and their variation over time is specific for each individual and can reveal information about the genetic composition of forest communities. Measuring trait variation among individuals of one species continuously across space and time is a key component in monitoring genetic diversity but difficult to achieve with ground-based methods. Remote sensing approaches using imaging spectroscopy can provide high spectral, spatial, and temporal coverage to advance the monitoring of genetic diversity, if sufficient relation between spectral and genetic information can be established. We assessed reflectance spectra from individual Fagus sylvatica L. (European beech) trees acquired across eleven years from 69 flights of the Airborne Prism Experiment (APEX) above the same temperate forest in Switzerland. We derived reflectance spectra of 68 canopy trees and correlated differences in these spectra with genetic differences derived from microsatellite markers among the 68 individuals. We calculated these correlations for different points in time, wavelength regions and relative differences between wavelength regions. High correlations indicate high spectral-genetic similarities. We then tested the influence of environmental variables obtained at temporal scales from days to years on spectral-genetic similarities. We performed an uncertainty propagation of radiance measurements to provide a quality indicator for these correlations. We observed that genetically similar individuals had more similar reflectance spectra, but this varied between wavelength regions and across environmental variables. The short-wave infrared regions of the spectrum, influenced by water absorption, seemed to provide information on the population genetic structure at high temperatures, whereas the visible part of the spectrum, and the near-infrared region affected by scattering properties of tree canopies, showed more consistent patterns with genetic structure across longer time scales. Correlations of genetic similarity with reflectance spectra similarity were easier to detect when investigating relative differences between spectral bands (maximum correlation: 0.40) than reflectance data (maximum correlation: 0.33). Incorporating uncertainties of spectral measurements yielded improvements of spectral-genetic similarities of 36% and 20% for analyses based on single spectral bands, and relative differences between spectral bands, respectively. This study highlights the potential of dense multi-temporal airborne imaging spectroscopy data to detect the genetic structure of forest communities. We suggest that the observed temporal trajectories of reflectance spectra indicate physiological and possibly genetic constraints on plant responses to environmental change

2nd generation of RSL’s spectrum database SPECCHIO

The organised storage of spectral data described by according metadata is important for long term use and data sharing with other scientists. The recently redesigned SPECCHIO system acts as a repository for spectral field campaign and reference signatures. An analysis of metadata space has resulted in a non-redundant relational data model and efficient graphical user interfaces with underlying processing mechanisms minimizing the required user interaction during data capture. Data retrieval is based on imposing restrictions on metadata space dimensions and the resulting dataset can be visualised on screen or exported to files. The system is based on a relational database server with a Java application providing the user interface. This architecture facilitates the operation of the system in a heterogeneous computing environment

The data concept behind the data: From metadata models and labelling schemes towards a generic spectral library

Spectral libraries play a major role in imaging spectroscopy. They are commonly used to store end-member and spectrally pure material spectra, which are primarily used for mapping or unmixing purposes. However, the development of spectral libraries is time consuming and usually sensor and site dependent. Spectral libraries are therefore often developed, used and tailored only for a specific case study and only for one sensor. Multi-sensor and multi-site use of spectral libraries is difficult and requires technical effort for adaptation, transformation, and data harmonization steps. Especially the huge amount of urban material specifications and its spectral variations hamper the setup of a complete spectral library consisting of all available urban material spectra. By a combined use of different urban spectral libraries, besides the improvement of spectral inter- and intra-class variability, missing material spectra could be considered with respect to a multi-sensor/ -site use. Publicly available spectral libraries mostly lack the metadata information that is essential for describing spectra acquisition and sampling background, and can serve to some extent as a measure of quality and reliability of the spectra and the entire library itself. In the GenLib project, a concept for a generic, multi-site and multi-sensor usable spectral library for image spectra on the urban focus was developed. This presentation will introduce a 1) unified, easy-to-understand hierarchical labeling scheme combined with 2) a comprehensive metadata concept that is 3) implemented in the SPECCHIO spectral information system to promote the setup and usability of a generic urban spectral library (GUSL). The labelling scheme was developed to ensure the translation of individual spectral libraries with their own labelling schemes and their usually varying level of details into the GUSL framework. It is based on a modified version of the EAGLE classification concept by combining land use, land cover, land characteristics and spectral characteristics. The metadata concept consists of 59 mandatory and optional attributes that are intended to specify the spatial context, spectral library information, references, accessibility, calibration, preprocessing steps, and spectra specific information describing library spectra implemented in the GUSL. It was developed on the basis of existing metadata concepts and was subject of an expert survey. The metadata concept and the labelling scheme are implemented in the spectral information system SPECCHIO, which is used for sharing and holding GUSL spectra. It allows easy implementation of spectra as well as their specification with the proposed metadata information to extend the GUSL. Therefore, the proposed data model represents a first fundamental step towards a generic usable and continuously expandable spectral library for urban areas. The metadata concept and the labelling scheme also build the basis for the necessary adaptation and transformation steps of the GUSL in order to use it entirely or in excerpts for further multi-site and multi-sensor applications

APEX status pt.1: instrument development and performance

ESA APEX (Airborne Prism EXperiment) is a project for the realisation of an airborne dispersive pushbroom imaging spectrometer, a dedicated data Processing and Archiving Facility (PAF, hosted at VITO) and a Calibration Home Base (CHB, hosted at DLR) for instrument calibration operation. It has been developed by a joint Swiss-Belgian consortium. The APEX instrument is facing its finalisation phase undergoing intense experimental activities in view of its validation and performance assessment. Environmental tests were executed to simulate flight environment conditions. The first APEX airborne campaign has been held in June 2009 covering a variety of water targets over Switzerland and Belgium. Extensive pre- and postflight characterisation and calibration campaigns were accomplished. Instrument data evaluation, performance analysis and optimisation of the data processing schemes adopted have followed. This paper outlines the activities performed and presents the first products achieved

EUROSPEC : at the interface between remote-sensing and ecosystem CO2 flux measurements in Europe

Resolving the spatial and temporal dynamics of gross primary productivity (GPP) of terrestrial ecosystems across different scales remains a challenge. Remote sensing is regarded as the solution to upscale point observations conducted at the ecosystem level, using the eddy covariance (EC) technique, to the landscape and global levels. In addition to traditional vegetation indices, the photochemical reflectance index (PRI) and the emission of solar-induced chlorophyll fluorescence (SIF), now measurable from space, provide a new range of opportunities to monitor the global carbon cycle using remote sensing. However, the scale mismatch between EC observations and the much coarser satellite-derived data complicate the integration of the two sources of data. The solution is to establish a network of in situ spectral measurements that can act as a bridge between EC measurements and remote-sensing data. In situ spectral measurements have already been conducted for many years at EC sites, but using variable instrumentation, setups, and measurement standards. In Europe in particular, in situ spectral measurements remain highly heterogeneous. The goal of EUROSPEC Cost Action ES0930 was to promote the development of common measuring protocols and new instruments towards establishing best practices and standardization of these measurements. In this review we describe the background and main tradeoffs of in situ spectral measurements, review the main results of EUROSPEC Cost Action, and discuss the future challenges and opportunities of in situ spectral measurements for improved estimation of local and global estimates of GPP over terrestrial ecosystems.Peer reviewe

The Laegeren site: an augmented forest laboratory combining 3-D reconstruction and radiative transfer models for trait-based assessment of functional diversity

Given the increased pressure on forests and their diversity in the context of global change, new ways of monitoring diversity are needed. Remote sensing has the potential to inform essential biodiversity variables on the global scale, but validation of data and products, particularly in remote areas, is difficult. We show how radiative transfer (RT) models, parameterized with a detailed 3-D forest reconstruction based on laser scanning, can be used to upscale leaf-level information to canopy scale. The simulation approach is compared with actual remote sensing data, showing very good agreement in both the spectral and spatial domains. In addition, we compute a set of physiological and morphological traits from airborne imaging spectroscopy and laser scanning data and show how these traits can be used to estimate the functional richness of a forest at regional scale. The presented RT modeling framework has the potential to prototype and validate future spaceborne observation concepts aimed at informing variables of biodiversity, while the trait-based mapping of diversity could augment in situ networks of diversity, providing effective spatiotemporal gap filling for a comprehensive assessment of changes to diversity

SPECCHIO: a free spectral data management and processing system

The management and storage of spectroradiometer data are important issues, especially in regards of long-term use, data quality and shareability. The SPECCHIO spectral database system developed at the Remote Sensing Laboratories (RSL) provides a solution for the organized storage of spectral data and associated metadata and for the spectral processing based on interactive, customizable and generic processing chains. Optimized data structures and graphical user interfaces combined with intelligent file parsing routines enable the efficient entry of spectral data and metadata. The system can be operated in a heterogeneous computing environment, offering multiuser access to a centralized database and enabling easy data sharing within and even across research groups

The spectral database SPECCHIO in support of Cal/Val activities

Field spectroscopy is a fundamental to Cal/Val as it provides a baseline for satellite and airborne measurements. The considerable time and money spent on the collection of accurate and valuable spectral ground reference data calls for a storage approach that maximises the utilisation of these data by data sharing while ensuring long-term usability. In this paper we present the state of the art of spectral databases on the example of the SPECCHIO database, its application to Cal/Val activities within the framework of the APEX (Airborne Prism EXperiment) project and general conclusions for future capabilities of spectral repositories